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seqfam 1.0 documentation
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S
A
aggregate_by_agg_col() (gene_burden.CMC method)
assign_variants_to_pop_frq_cats() (gene_burden.CMC method)
C
CMC (class in gene_burden)
Cohort (class in gene_drop)
convert_ped_df_to_node_l() (gene_drop.NodeGenerator method)
convert_tuple_to_ids() (relatedness.Relatedness method)
D
do_multivariate_test() (gene_burden.CMC method)
do_multivariate_tests() (gene_burden.CMC method)
F
Family (class in pof)
FamilyTree (class in gene_drop)
find_duplicates() (relatedness.Relatedness method)
fit_logit_model() (gene_burden.CMC method)
G
gene_burden (module)
gene_drop (module)
gene_drop() (gene_drop.Cohort method)
(gene_drop.FamilyTree method)
gene_drop_dfs() (gene_drop.FamilyTree method)
get_agg_cat_count_df() (gene_burden.CMC method)
get_agg_cat_prop_by_affection() (gene_burden.CMC method)
get_all_family_l() (gene_drop.Cohort method)
get_all_sample_l() (gene_drop.Cohort method)
get_coef_pval_l() (gene_burden.CMC method)
get_exp_obs_df() (relatedness.Relatedness method)
get_exp_rel() (relatedness.Relatedness method)
get_exp_rel_df() (relatedness.Relatedness method)
get_family_pass_name_l() (pof.Pof method)
get_kinship_coef() (relatedness.Relatedness method)
get_relations_s() (relatedness.Relatedness method)
get_summary_str() (gene_drop.Node method)
L
log() (misc.Logger method)
log_all_genotypes() (gene_drop.FamilyTree method)
log_all_info() (gene_drop.FamilyTree method)
log_info() (pof.Family method)
Logger (class in misc)
M
make_fam_tree() (gene_drop.Cohort method)
make_map_reduce_jobs() (sge.SGE method)
misc (module)
N
Node (class in gene_drop)
NodeGenerator (class in gene_drop)
P
pass_po() (pof.Family method)
Pof (class in pof)
pof (module)
R
Relatedness (class in relatedness)
relatedness (module)
remove() (gene_drop.Cohort method)
S
set_offspring_genotype() (gene_drop.FamilyTree method)
set_relationships() (gene_drop.NodeGenerator method)
SGE (class in sge)
sge (module)
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